ModelSEEDDatabase:该存储库包含使用ModelSEEDProbAnno方法构建模型的生物化学和元数据的最终副本
ModelSEED生化数据库
抽象的
十多年来，ModelSEED一直是基于带注释的微生物或植物基因组构建基因组规模代谢模型草案的主要资源。 生物化学数据库现已发布，是ModelSEED和KBase背后的生物化学数据的基础。 生物化学数据库体现了几种特性，这些特性通过以下方式共同使其与其他已出版的生物化学资源区分开来：（i）包括区室化，转运React，带电分子和质子对React的平衡； （ii）由用户社区扩展，所有数据都存储在GitHub中； （iii）设计为生化“罗塞塔石”，以促进对来自许多不同工具和数据库的注释进行比较和集成。 该数据库是通过组合来自多种资源的化学数据，应用标准转换，识别冗余并计算热力学性质而构建的。 使用通量平衡分析对ModelSEED生物化学进行连续测试，以确保生物化学网络可进行建模，并能够模拟各种表型。 可以将本体设计为有助于比较和协调新陈代谢重构，这些新陈代谢重
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